ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6rn6D1 - ECOD Domain | ECOD

ECOD/Domains/e6rn6D1

e6rn6D1

UID: 002538407

PDB

Range: D:1-118
PDB: 6RN6 chain D(all domains)
UniProt: P53634 (all domains)
Gene: CTSC

Molecule: Dipeptidyl peptidase 1

3D Structure

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Related Domains

Browse other domains in CathepsinC_exc →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLipocalins/Streptavidin(9)

HH-groupDipeptidyl peptidase I (cathepsin C), exclusion domain(9.8)

TT-groupDipeptidyl peptidase I (cathepsin C), exclusion domain(9.8.1)

FFamilyCathepsinC_exc(9.8.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Chloride ionCL
(2~{S},4~{R})-~{N}-[(2~{S})-1-azanyl-3-(4-phenylphenyl)propan-2-yl]-4-oxidanyl-pyrrolidine-2-carboxamideK9Q

Pfam Families

PF08773CathepsinC_exc

Cathepsin C exclusion domain

ClanCL0116Calycin

External Links

ECOD PDB View: 6RN6 RCSB PDB: 6RN6 PDBe: 6RN6 UniProt: P53634

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.