ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4memA3 - ECOD Domain | ECOD

ECOD/Domains/e4memA3

e4memA3

UID: 002539256

PDB

Range: A:142-237
PDB: 4MEM chain A(all domains)
UniProt: Q5D006 (all domains)
Gene: Usp11

Molecule: Ubiquitin carboxyl-terminal hydrolase 11 (EC 3.4.19.12) (Deubiquitinating enzyme 11) (Ubiquitin thioesterase 11) (Ubiquitin-specific-processing protease 11)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Ubiquitin_3 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyUbiquitin_3(221.1.1.53)

Pfam Families

PF14836Ubiquitin_3

Ubiquitin-like domain

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 4MEM RCSB PDB: 4MEM PDBe: 4MEM UniProt: Q5D006

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure