ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ub9H1 - ECOD Domain | ECOD

ECOD/Domains/e6ub9H1

e6ub9H1

UID: 002540566

PDB

Range: H:5-214
PDB: 6UB9 chain H(all domains)
UniProt: P9WFX9 (all domains)
Gene: trpB

Molecule: Tryptophan synthase beta chain

3D Structure

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Related Domains

Browse other domains in PALP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupTryptophan synthase beta subunit-like PLP-dependent enzymes(2003.4)

TT-groupTryptophan synthase beta subunit-like PLP-dependent enzymes(2003.4.1)

FFamilyPALP(2003.4.1.1)

Ligands

in contact, ≤ 4 Å

Malonic acidMLA
drugDrugBank DB02175within 5 Å only
(2R,3S,4R)-3-(4'-chloro-2',6'-difluoro[1,1'-biphenyl]-4-yl)-4-(fluoromethyl)azetidine-2-carbonitrileH9V
2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID

Pfam Families

Pyridoxal-phosphate dependent enzyme

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6UB9 RCSB PDB: 6UB9 PDBe: 6UB9 UniProt: P9WFX9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Formic acid)

Formic acidFMT
DrugBank DB01942

Shown in the structure viewer. Drug annotations from DrugDomain.