ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1jriM1 - ECOD Domain | ECOD

ECOD/Domains/e1jriM1

e1jriM1

UID: 000025425

PDB

Range: M:12-82
PDB: 1JRI chain M(all domains)
UniProt: O26745 (all domains)
Gene: MTH_649

Molecule: Sm-like Archaeal Protein 1 (SmAP1)

3D Structure

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Related Domains

Browse other domains in LSM →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyLSM(4.1.1.19)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
within 5 Å only

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

LSM domain

ClanCL0986Sm-like

External Links

ECOD PDB View: 1JRI RCSB PDB: 1JRI PDBe: 1JRI UniProt: O26745

Downloads

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