ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6qsnA1 - ECOD Domain | ECOD

ECOD/Domains/e6qsnA1

e6qsnA1

UID: 002543726

PDB

Range: A:705-894
PDB: 6QSN chain A(all domains)
UniProt: P03314 (all domains)

Molecule: Genome polyprotein

3D Structure

Loading viewer...

Related Domains

Browse other domains in Flavi_NS5_thumb →

Classification

AArchitecturealpha bundles(a.7)

XX-grouphelical bundle domain in reverse transcriptase-like polymerases(4967)

HH-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1)

TT-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1.1)

FFamilyFlavi_NS5_thumb(4967.1.1.14)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF20483Flavi_NS5_thumb

Flavivirus RNA-directed RNA polymerase, thumb domain

ClanCL0027RdRP

External Links

ECOD PDB View: 6QSN RCSB PDB: 6QSN PDBe: 6QSN UniProt: P03314

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure