ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6jlmX1 - ECOD Domain | ECOD

ECOD/Domains/e6jlmX1

e6jlmX1

UID: 002544781

PDB

Range: X:2-40
PDB: 6JLM chain X(all domains)
UniProt: D0VWR4 (all domains)
Gene: psbX

Molecule: Photosystem II reaction center protein X

3D Structure

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Related Domains

Browse other domains in PsbX →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II PsbX protein(3493)

HH-groupPhotosystem II PsbX protein(3493.1)

TT-groupPhotosystem II PsbX protein(3493.1.1)

FFamilyPsbX(3493.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll ACLA
drugDrugBank DB02133
2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE

Pfam Families

Photosystem II reaction centre X protein (PsbX)

External Links

ECOD PDB View: 6JLM RCSB PDB: 6JLM PDBe: 6JLM UniProt: D0VWR4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

Unknown ligandUNL

+ 1 additive (Dodecyl-beta-d-maltoside)

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.