ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6pemr1 - ECOD Domain | ECOD

ECOD/Domains/e6pemr1

e6pemr1

UID: 002545421

PDB

Range: r:82-203
PDB: 6PEM chain r(all domains)
UniProt: P41786 (all domains)
Gene: prgK

Molecule: Lipoprotein PrgK

3D Structure

Loading viewer...

Related Domains

Browse other domains in YscJ_FliF →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-lytic protease prodomain-like(327)

HH-groupRing-building motif I in type III secretion system(327.13)

TT-groupRing-building motif I in type III secretion system(327.13.1)

FFamilyYscJ_FliF(327.13.1.1)

Pfam Families

PF01514YscJ_FliF

Secretory protein of YscJ/FliF RBM domain

ClanCL0873RBM_T3SS-Flag

External Links

ECOD PDB View: 6PEM RCSB PDB: 6PEM PDBe: 6PEM UniProt: P41786

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure