ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6n2hA1 - ECOD Domain | ECOD

ECOD/Domains/e6n2hA1

e6n2hA1

UID: 002546510

PDB

Range: A:1-51,A:317-466
PDB: 6N2H chain A(all domains)
UniProt: Q8ZNC4 (all domains)
Gene: dokD

Molecule: D-ornithine/D-lysine decarboxylase

3D Structure

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Related Domains

Browse other domains in Orn_DAP_Arg_deC →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilyOrn_DAP_Arg_deC(1.1.7.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (1,4-Dioxane, Dimethyl sulfoxide)

1,4-DioxaneDIO
DrugBank DB03316
Dimethyl sulfoxideDMS

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00278Orn_DAP_Arg_deC

Pyridoxal-dependent decarboxylase, C-terminal sheet domain

ClanCL0866ALR_C-like

External Links

ECOD PDB View: 6N2H RCSB PDB: 6N2H PDBe: 6N2H UniProt: Q8ZNC4

Downloads

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