ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6rtrB1 - ECOD Domain | ECOD

ECOD/Domains/e6rtrB1

e6rtrB1

UID: 002562508

PDB

Range: B:268-505
PDB: 6RTR chain B(all domains)
UniProt: O85725 (all domains)
Gene: pcd

Molecule: Semialdehyde dehydrogenase Pcd

3D Structure

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Related Domains

Browse other domains in Aldedh →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupALDH-like(7524)

HH-groupALDH-like(7524.1)

TT-groupALDH-like(7524.1.1)

FFamilyAldedh(7524.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Acetate, Sulfate ion, Glycerol)

AcetateACT
DrugBank DB14511
Sulfate ionSO4
DrugBank DB14546
Glycerol

Pfam Families

Aldehyde dehydrogenase family

ClanCL0099ALDH-like

External Links

ECOD PDB View: 6RTR RCSB PDB: 6RTR PDBe: 6RTR UniProt: O85725

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.