ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6smwD1 - ECOD Domain | ECOD

ECOD/Domains/e6smwD1

e6smwD1

UID: 002568497

PDB

Range: D:350-517
PDB: 6SMW chain D(all domains)
UniProt: Q94C74 (all domains)
Gene: SHM2

Molecule: Serine hydroxymethyltransferase 2, mitochondrial

3D Structure

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Related Domains

Browse other domains in SHMT →

Classification

AArchitecturea+b two layers(a.11)

XX-groupC-terminal domain in some PLP-dependent transferases(3016)

HH-groupC-terminal domain in some PLP-dependent transferases(3016.1)

TT-groupC-terminal domain in some PLP-dependent transferases(3016.1.1)

FFamilySHMT(3016.1.1.5)

Ligands

in contact, ≤ 4 Å

PemetrexedLYA
drugDrugBank DB00642
SerineSER
drugDrugBank DB00133

+ 1 additive (1,2-ETHANEDIOL)

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 6SMW RCSB PDB: 6SMW PDBe: 6SMW UniProt: Q94C74

Downloads

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1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.