ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6e2yA2 - ECOD Domain | ECOD

ECOD/Domains/e6e2yA2

e6e2yA2

UID: 002570004

PDB

Range: A:0-167
PDB: 6E2Y chain A(all domains)
UniProt: Q9FD68 (all domains)
Gene: mvaD

Molecule: Mevalonate diphosphate decarboxylase

3D Structure

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Related Domains

Browse other domains in MVD-like_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyMVD-like_N(212.1.1.25)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
COBALT (II) IONCO
metal
(3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID

Pfam Families

PF22700MVD-like_N

Diphosphomevalonate decarboxylase-like N-terminal domain

ClanCL0329S5

External Links

ECOD PDB View: 6E2Y RCSB PDB: 6E2Y PDBe: 6E2Y UniProt: Q9FD68

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.