ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5odrF2 - ECOD Domain | ECOD

ECOD/Domains/e5odrF2

e5odrF2

UID: 002577026

PDB

Range: F:40-82,F:360-407
PDB: 5ODR chain F(all domains)
UniProt: A0A2D0TCA6 (all domains)

Molecule: Methyl-viologen reducing hydrogenase, subunit A

3D Structure

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Related Domains

Browse other domains in NiFeSe_Hases →

Classification

AArchitecturea+b two layers(a.11)

XX-groupFAD-linked reductases, C-terminal domain-like(244)

HH-groupNi-Fe binding domain in nickel-iron hydrogenase large subunit(244.4)

TT-groupNi-Fe binding domain in nickel-iron hydrogenase large subunit(244.4.1)

FFamilyNiFeSe_Hases(244.4.1.2)

Ligands

in contact, ≤ 4 Å

FE (III) IONFE
metal
formyl[bis(hydrocyanato-1kappaC)]ironnickel(Fe-Ni)NFU
Iron/sulfur clusterSF4

+ 1 additive (Acetate)

Pfam Families

PF00374NiFeSe_Hases

Nickel-dependent hydrogenase

External Links

ECOD PDB View: 5ODR RCSB PDB: 5ODR PDBe: 5ODR UniProt: A0A2D0TCA6

Downloads

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AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.