ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6sz8B1 - ECOD Domain | ECOD

ECOD/Domains/e6sz8B1

e6sz8B1

UID: 002592657

PDB

Range: B:344-507
PDB: 6SZ8 chain B(all domains)
UniProt: A0A2K6KCS5 (all domains)
Gene: YTHDC1

Molecule: YTH domain-containing protein 1

3D Structure

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Related Domains

Browse other domains in YTH →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupPUA domain(1.1.9)

FFamilyYTH(1.1.9.8)

Ligands

in contact, ≤ 4 Å

6-pyrrolidin-1-yl-5~{H}-pyrimidine-2,4-dioneM1Z

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

YT521-B-like domain

ClanCL0178PUA

External Links

ECOD PDB View: 6SZ8 RCSB PDB: 6SZ8 PDBe: 6SZ8 UniProt: A0A2K6KCS5

Downloads

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