ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6vqxJ1 - ECOD Domain | ECOD

ECOD/Domains/e6vqxJ1

e6vqxJ1

UID: 002593117

PDB

Range: J:1-93
PDB: 6VQX chain J(all domains)
UniProt: Q02MM2 (all domains)
Gene: cas6f

Molecule: CRISPR-associated endonuclease Cas6/Csy4 (EC 3.1.-.-)

3D Structure

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Related Domains

Browse other domains in Cas_Csy4 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51)

TT-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51.1)

FFamilyCas_Csy4(304.51.1.5)

Pfam Families

PF09618Cas_Csy4

CRISPR-associated protein (Cas_Csy4)

ClanCL0362RAMPS-Cas5-like

External Links

ECOD PDB View: 6VQX RCSB PDB: 6VQX PDBe: 6VQX UniProt: Q02MM2

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