ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6vyoA1 - ECOD Domain | ECOD

ECOD/Domains/e6vyoA1

e6vyoA1

UID: 002595267

PDB

Range: A:50-173
PDB: 6VYO chain A(all domains)
UniProt: P0DTC9 (all domains)
Gene: N

Molecule: Nucleoprotein

3D Structure

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Related Domains

Browse other domains in CoV_nucleocap →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupCoronavirus RNA-binding domain (N-terminal part of Pfam 00937)(704)

HH-groupCoronavirus RNA-binding domain (N-terminal part of Pfam 00937)(704.1)

TT-groupCoronavirus RNA-binding domain (N-terminal part of Pfam 00937)(704.1.1)

FFamilyCoV_nucleocap(704.1.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal
Chloride ionCL
within 5 Å only

+ 1 additive (2-(N-morpholino)ethanesulfonic acid)

2-(N-morpholino)ethanesulfonic acid

Pfam Families

PF00937CoV_nucleocap

Coronavirus nucleocapsid

External Links

ECOD PDB View: 6VYO RCSB PDB: 6VYO PDBe: 6VYO UniProt: P0DTC9

Downloads

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DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.