ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5gvpA2 - ECOD Domain | ECOD

ECOD/Domains/e5gvpA2

e5gvpA2

UID: 002606621

PDB

Range: A:1-290
PDB: 5GVP chain A(all domains)
UniProt: A5K8L9 (all domains)
Gene: PVX_100730

Molecule: Serine hydroxymethyltransferase, putative

3D Structure

Loading viewer...

Related Domains

Browse other domains in SHMT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilySHMT(7577.1.1.5)

Ligands

in contact, ≤ 4 Å

N-Pyridoxyl-Glycine-5-MonophosphatePLG
drugDrugBank DB02824
Chloride ionCL
3-[3-[3-[(4~{S})-6-azanyl-5-cyano-3-methyl-4-propan-2-yl-2~{H}-pyrano[2,3-c]pyrazol-4-yl]-5-(trifluoromethyl)phenyl]phenyl]propanoic acid

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 5GVP RCSB PDB: 5GVP PDBe: 5GVP UniProt: A5K8L9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.