ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5r64A1 - ECOD Domain | ECOD

ECOD/Domains/e5r64A1

e5r64A1

UID: 002617274

PDB

Range: A:31-227
PDB: 5R64 chain A(all domains)
UniProt: O43809 (all domains)
Gene: NUDT21

Molecule: Cleavage and polyadenylation specificity factor subunit 5

3D Structure

Loading viewer...

Related Domains

Browse other domains in NUDIX_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupNudix(221.4)

TT-groupNudix(221.4.1)

FFamilyNUDIX_2(221.4.1.8)

Ligands

in contact, ≤ 4 Å

N-[(2S)-2-hydroxypropyl]-N'-phenylureaM0J
Zinc ionZN
metal

+ 1 additive (Acetate)

AcetateACT

Pfam Families

PF13869NUDIX_2

Nucleotide hydrolase

ClanCL0261NUDIX

External Links

ECOD PDB View: 5R64 RCSB PDB: 5R64 PDBe: 5R64 UniProt: O43809

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.