ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5rafB1 - ECOD Domain | ECOD

ECOD/Domains/e5rafB1

e5rafB1

UID: 002625128

PDB

Range: B:1379-1725
PDB: 5RAF chain B(all domains)
UniProt: Q7LBC6 (all domains)
Gene: KDM3B

Molecule: Lysine-specific demethylase 3B

3D Structure

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Related Domains

Browse other domains in JmjC →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC(10.12.1.9)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
MANGANESE (II) IONMN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

External Links

ECOD PDB View: 5RAF RCSB PDB: 5RAF PDBe: 5RAF UniProt: Q7LBC6

Downloads

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