ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5rakB1 - ECOD Domain | ECOD

ECOD/Domains/e5rakB1

e5rakB1

UID: 002625138

PDB

Range: B:1379-1725
PDB: 5RAK chain B(all domains)
UniProt: Q7LBC6 (all domains)
Gene: KDM3B

Molecule: Lysine-specific demethylase 3B

3D Structure

Loading viewer...

Related Domains

Browse other domains in JmjC →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC(10.12.1.9)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
MANGANESE (II) IONMN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

External Links

ECOD PDB View: 5RAK RCSB PDB: 5RAK PDBe: 5RAK UniProt: Q7LBC6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure