ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ravA1 - ECOD Domain | ECOD

ECOD/Domains/e5ravA1

e5ravA1

UID: 002625157

PDB

Range: A:1378-1717
PDB: 5RAV chain A(all domains)
UniProt: Q7LBC6 (all domains)
Gene: KDM3B

Molecule: Lysine-specific demethylase 3B

3D Structure

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Related Domains

Browse other domains in JmjC →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC(10.12.1.9)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
MANGANESE (II) IONMN
metal
cyclopropyl-[4-[(2~{S})-oxolan-2-yl]carbonylpiperazin-1-yl]methanoneS9G

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

External Links

ECOD PDB View: 5RAV RCSB PDB: 5RAV PDBe: 5RAV UniProt: Q7LBC6

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.