ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6u1dB1 - ECOD Domain | ECOD

ECOD/Domains/e6u1dB1

e6u1dB1

UID: 002626010

PDB

Range: B:-1-114
PDB: 6U1D chain B(all domains)
UniProt: Q5SHZ3 (all domains)
Gene: ddl

Molecule: D-alanine--D-alanine ligase

3D Structure

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Related Domains

Browse other domains in Dala_Dala_lig_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupPreATP-grasp domain(2003.1.10)

FFamilyDala_Dala_lig_N(2003.1.10.2)

Ligands

in contact, ≤ 4 Å

ATPATP
drugDrugBank DB00171within 5 Å only
D-alanineDAL
Rubidium ionRB
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01820Dala_Dala_lig_N

D-ala D-ala ligase N-terminus

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6U1D RCSB PDB: 6U1D PDBe: 6U1D UniProt: Q5SHZ3

Downloads

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