ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ydvBBB1 - ECOD Domain | ECOD

ECOD/Domains/e6ydvBBB1

e6ydvBBB1

UID: 002626057

PDB

Range: BBB:1379-1725
PDB: 6YDV chain BBB(all domains)
UniProt: A4FUT8 (all domains)
Gene: JMJD1B

Molecule: JMJD1B protein

3D Structure

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Related Domains

Browse other domains in JmjC →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC(10.12.1.9)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
MANGANESE (II) IONMN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

External Links

ECOD PDB View: 6YDV RCSB PDB: 6YDV PDBe: 6YDV UniProt: A4FUT8

Downloads

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