ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5qplA1 - ECOD Domain | ECOD

ECOD/Domains/e5qplA1

e5qplA1

UID: 002627293

PDB

Range: A:1-360
PDB: 5QPL chain A(all domains)
UniProt: Q8WS26 (all domains)

Molecule: Farnesyl diphosphate synthase

3D Structure

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Related Domains

Browse other domains in polyprenyl_synt →

Classification

AArchitecturealpha bundles(a.7)

XX-groupTerpenoid synthases(141)

HH-groupTerpenoid synthases(141.1)

TT-groupTerpenoid synthases(141.1.1)

FFamilypolyprenyl_synt(141.1.1.1)

Ligands

in contact, ≤ 4 Å

N-[(2S)-2-hydroxypropyl]-N'-phenylureaM0J
Zinc ionZN
metal

+ 2 additives (Acetate, Sulfate ion)

AcetateACT

Pfam Families

PF00348polyprenyl_synt

Polyprenyl synthetase

ClanCL0613Terp_synthase

External Links

ECOD PDB View: 5QPL RCSB PDB: 5QPL PDBe: 5QPL UniProt: Q8WS26

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.