ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6wkpD1 - ECOD Domain | ECOD

ECOD/Domains/e6wkpD1

e6wkpD1

UID: 002627405

PDB

Range: D:49-173
PDB: 6WKP chain D(all domains)
UniProt: P0DTC9 (all domains)
Gene: N

Molecule: Nucleoprotein

3D Structure

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Related Domains

Browse other domains in CoV_nucleocap →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupCoronavirus RNA-binding domain (N-terminal part of Pfam 00937)(704)

HH-groupCoronavirus RNA-binding domain (N-terminal part of Pfam 00937)(704.1)

TT-groupCoronavirus RNA-binding domain (N-terminal part of Pfam 00937)(704.1.1)

FFamilyCoV_nucleocap(704.1.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (2-(N-morpholino)ethanesulfonic acid)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Shown in the structure viewer.

Pfam Families

PF00937CoV_nucleocap

Coronavirus nucleocapsid

External Links

ECOD PDB View: 6WKP RCSB PDB: 6WKP PDBe: 6WKP UniProt: P0DTC9

Downloads

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Drug annotations from DrugDomain.