ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6wlcB2 - ECOD Domain | ECOD

ECOD/Domains/e6wlcB2

e6wlcB2

UID: 002627409

PDB

Range: B:-20-169
PDB: 6WLC chain B(all domains)
UniProt: P0DTD1 (all domains)
Gene: rep

Molecule: Uridylate-specific endoribonuclease

3D Structure

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Related Domains

Browse other domains in Coronavirus replicase NSP15, middle domain / Coronavirus replicase NSP15, N-terminal oligomerisation →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyCoronavirus replicase NSP15, middle domain / Coronavirus replicase NSP15, N-terminal oligomerisation(2003.1.5.85)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 4 additives (Acetate, Formic acid, Tromethamine, …)

AcetateACT
DrugBank DB14511
Formic acidFMT
DrugBank DB01942
Tromethamine

Pfam Families

PF19216CoV_NSP15_M

Coronavirus replicase NSP15, middle domain

PF19219CoV_NSP15_N

Coronavirus replicase NSP15, N-terminal oligomerisation

External Links

ECOD PDB View: 6WLC RCSB PDB: 6WLC PDBe: 6WLC UniProt: P0DTD1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03754

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.