ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6pgsA1 - ECOD Domain | ECOD

ECOD/Domains/e6pgsA1

e6pgsA1

UID: 002632357

PDB

Range: A:1-326
PDB: 6PGS chain A(all domains)
UniProt: P02699 (all domains)
Gene: RHO

Molecule: Rhodopsin

3D Structure

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Related Domains

Browse other domains in 7tm_1 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFamily A G protein-coupled receptor-like(5001)

HH-groupFamily A G protein-coupled receptor-like(5001.1)

TT-groupFamily A G protein-coupled receptor-like(5001.1.1)

FFamily7tm_1(5001.1.1.1)

Ligands

in contact, ≤ 4 Å

Geraniol64Z
drugDrugBank DB14183
Palmitic AcidPLM
drugDrugBank DB03796

+ 1 additive (octyl beta-D-glucopyranoside)

Pfam Families

7 transmembrane receptor (rhodopsin family)

ClanCL0192GPCR_A

External Links

ECOD PDB View: 6PGS RCSB PDB: 6PGS PDBe: 6PGS UniProt: P02699

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

octyl beta-D-glucopyranosideBOG

Shown in the structure viewer. Drug annotations from DrugDomain.