ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5r4sA1 - ECOD Domain | ECOD

ECOD/Domains/e5r4sA1

e5r4sA1

UID: 002633413

PDB

Range: A:31-227
PDB: 5R4S chain A(all domains)
UniProt: O43809 (all domains)
Gene: NUDT21

Molecule: Cleavage and polyadenylation specificity factor subunit 5

3D Structure

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Related Domains

Browse other domains in NUDIX_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupNudix(221.4)

TT-groupNudix(221.4.1)

FFamilyNUDIX_2(221.4.1.8)

Ligands

in contact, ≤ 4 Å

(4S,5R)-4-hydroxy-5-methyl-5-[(1-phenyl-1H-1,2,3-triazol-4-yl)methyl]pyrrolidin-2-oneRWD
Zinc ionZN
metal

+ 1 additive (Acetate)

Acetate

Pfam Families

PF13869NUDIX_2

Nucleotide hydrolase

ClanCL0261NUDIX

External Links

ECOD PDB View: 5R4S RCSB PDB: 5R4S PDBe: 5R4S UniProt: O43809

Downloads

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DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.