ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6sm3B1 - ECOD Domain | ECOD

ECOD/Domains/e6sm3B1

e6sm3B1

UID: 002634662

PDB

Range: B:232-993
PDB: 6SM3 chain B(all domains)
UniProt: Q7MXJ7 (all domains)
Gene: ragA

Molecule: RagA protein

3D Structure

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Related Domains

Browse other domains in TonB_dep_Rec_b-barrel →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupPorins(5084.5)

TT-groupLigand-gated protein channel(5084.5.3)

FFamilyTonB_dep_Rec_b-barrel(5084.5.3.1)

Ligands

in contact, ≤ 4 Å

(1R,4S,6R)-6-({[2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-GLUCOPYRANOSYL]OXY}METHYL)-4-HYDROXY-1-{[(15-METHYLHEXADECANOYL)OXY]METHYL}-4-OXIDO-7-OXO-3,5-DIOXA-8-AZA-4-PHOSPHAHEPTACOS-1-YL 15-METHYLHEXADECANOATE5PL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00593TonB_dep_Rec_b-barrel

TonB dependent receptor-like, beta-barrel

ClanCL0193MBB

External Links

ECOD PDB View: 6SM3 RCSB PDB: 6SM3 PDBe: 6SM3 UniProt: Q7MXJ7

Downloads

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