ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6wndA2 - ECOD Domain | ECOD

ECOD/Domains/e6wndA2

e6wndA2

UID: 002639668

PDB

Range: A:126-334
PDB: 6WND chain A(all domains)
UniProt: C3RVP5 (all domains)
Gene: sxtDIOX

Molecule: SxtDIOX

3D Structure

Loading viewer...

Related Domains

Browse other domains in VanA_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupTBP-like(331)

HH-groupBet v1-like(331.3)

TT-groupBet v1-like(331.3.1)

FFamilyVanA_C(331.3.1.19)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
FE (III) IONFE
metal
[(2Z,3aS,4R,6Z,10aR)-2,6-diiminooctahydro-1H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamateU5A

Pfam Families

Vanillate O-demethylase oxygenase C-terminal domain

ClanCL0209Bet_v_1_like

External Links

ECOD PDB View: 6WND RCSB PDB: 6WND PDBe: 6WND UniProt: C3RVP5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.