ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yk6A2 - ECOD Domain | ECOD

ECOD/Domains/e6yk6A2

e6yk6A2

UID: 002641652

PDB

Range: A:1-108,A:219-262
PDB: 6YK6 chain A(all domains)
UniProt: P19491 (all domains)
Gene: Gria2

Molecule: Glutamate receptor 2,Glutamate receptor 2

3D Structure

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Related Domains

Browse other domains in Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLig_chan-Glu_bd(7523.1.1.20)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Lithium ionLI
metal
(S)-1-(2'-Amino-2'-carboxyethyl)furo[3,4-d]pyrimidin-2,4-dioneOUB

+ 2 additives (Glycerol, Sulfate ion)

Pfam Families

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 6YK6 RCSB PDB: 6YK6 PDBe: 6YK6 UniProt: P19491

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerolGOL
Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.