ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ymdA2 - ECOD Domain | ECOD

ECOD/Domains/e6ymdA2

e6ymdA2

UID: 002641660

PDB

Range: A:282-422
PDB: 6YMD chain A(all domains)
UniProt: I7H6W6 (all domains)
Gene: glyrA

Molecule: Serine hydroxymethyltransferase

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupC-terminal domain in some PLP-dependent transferases(3016)

HH-groupC-terminal domain in some PLP-dependent transferases(3016.1)

TT-groupC-terminal domain in some PLP-dependent transferases(3016.1.1)

FFamilySHMT(3016.1.1.5)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 2 additives (Malonate Ion, 1,2-ETHANEDIOL)

Malonate IonMLI
DrugBank DB02201
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 6YMD RCSB PDB: 6YMD PDBe: 6YMD UniProt: I7H6W6

Downloads

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