ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6u1iC1 - ECOD Domain | ECOD

ECOD/Domains/e6u1iC1

e6u1iC1

UID: 002646276

PDB

Range: C:115-324
PDB: 6U1I chain C(all domains)
UniProt: Q5SHZ3 (all domains)
Gene: ddl

Molecule: D-alanine--D-alanine ligase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Dala_Dala_lig_C →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyDala_Dala_lig_C(206.1.3.19)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
[(4R)-4-azanyl-4,5-dihydro-1,2-oxazol-3-yl] dihydrogen phosphateDS0
Potassium ionK

Pfam Families

PF07478Dala_Dala_lig_C

D-ala D-ala ligase C-terminus

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 6U1I RCSB PDB: 6U1I PDBe: 6U1I UniProt: Q5SHZ3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.