ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7c9rY1 - ECOD Domain | ECOD

ECOD/Domains/e7c9rY1

e7c9rY1

UID: 002665292

PDB

Range: Y:3-75
PDB: 7C9R chain Y(all domains)
UniProt: H8Z3R9 (all domains)
Gene: Thi970DRAFT_03671

Molecule: LHC domain-containing protein

3D Structure

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Related Domains

Browse other domains in LHC →

Classification

AArchitectureextended segments(a.20)

XX-groupBacterial light-harvesting complex subunits(5074)

HH-groupBacterial light-harvesting complex subunits(5074.1)

TT-groupBacterial light-harvesting complex subunits(5074.1.1)

FFamilyLHC(5074.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
Tetrastearoyl cardiolipinCDL
drugDrugBank DB03429

Pfam Families

Antenna complex alpha/beta subunit

External Links

ECOD PDB View: 7C9R RCSB PDB: 7C9R PDBe: 7C9R UniProt: H8Z3R9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Calcium ion

metal

(6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E},26~{E})-2,31-dimethoxy-2,6,10,14,19,23,27,31-octamethyl-dotriaconta-6,8,10,12,14,16,18,20,22,24,26-undecaeneH4X

(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEPGV

+ 1 additive (Dodecyl-beta-d-maltoside)

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.