ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6syoMMM1 - ECOD Domain | ECOD

ECOD/Domains/e6syoMMM1

e6syoMMM1

UID: 002670659

PDB

Range: MMM:81-322,MMM:373-463
PDB: 6SYO chain MMM(all domains)
UniProt: P0ACE0 (all domains)
Gene: hybC

Molecule: Hydrogenase-2 large chain

3D Structure

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Related Domains

Browse other domains in NiFeSe_Hases →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025)

HH-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025.1)

TT-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025.1.1)

FFamilyNiFeSe_Hases(4025.1.1.2)

Ligands

in contact, ≤ 4 Å

OxygenOXY
drugDrugBank DB09140within 5 Å only
Chloride ionCL
FE3-S4 CLUSTERF3S

Pfam Families

PF00374NiFeSe_Hases

Nickel-dependent hydrogenase

External Links

ECOD PDB View: 6SYO RCSB PDB: 6SYO PDBe: 6SYO UniProt: P0ACE0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Iron/sulfur clusterSF4

CARBONMONOXIDE-(DICYANO) IRONFCO

within 5 Å only

Magnesium ionMG

metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.