ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6usaH1 - ECOD Domain | ECOD

ECOD/Domains/e6usaH1

e6usaH1

UID: 002671991

PDB

Range: H:215-407
PDB: 6USA chain H(all domains)
UniProt: P9WFX9 (all domains)
Gene: trpB

Molecule: Tryptophan synthase beta chain

3D Structure

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Related Domains

Browse other domains in PALP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupTryptophan synthase beta subunit-like PLP-dependent enzymes(2003.4)

TT-groupTryptophan synthase beta subunit-like PLP-dependent enzymes(2003.4.1)

FFamilyPALP(2003.4.1.1)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metal
Sodium ionNA
metal
2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACIDP1T

Pfam Families

Pyridoxal-phosphate dependent enzyme

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6USA RCSB PDB: 6USA PDBe: 6USA UniProt: P9WFX9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(3R,4R)-4-[4-(2-Chlorophenyl)piperazin-1-yl]-1,1-dioxothiolan-3-olPZJ

+ 2 additives (Sulfate ion, Formic acid)

Sulfate ionSO4
DrugBank DB14546
Formic acidFMT

Shown in the structure viewer. Drug annotations from DrugDomain.