ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yttB2 - ECOD Domain | ECOD

ECOD/Domains/e6yttB2

e6yttB2

UID: 002697468

PDB

Range: B:401-631
PDB: 6YTT chain B(all domains)
UniProt: U5RTE2 (all domains)

Molecule: Carbon-monoxide dehydrogenase (Acceptor),Carbon-monoxide dehydrogenase (Acceptor)

3D Structure

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Related Domains

Browse other domains in Prismane →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like domain in prismane-like proteins(7586)

HH-groupRossmann-like domain in prismane-like proteins(7586.1)

TT-groupRossmann-like domain in prismane-like proteins(7586.1.1)

FFamilyPrismane(7586.1.1.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
FE(4)-NI(1)-S(4) CLUSTERXCC

+ 2 additives (Glycerin, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL)

GlycerinGOL

Pfam Families

PF03063Prismane

Prismane/CO dehydrogenase family

ClanCL0113GT-B

External Links

ECOD PDB View: 6YTT RCSB PDB: 6YTT PDBe: 6YTT UniProt: U5RTE2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOLPE4

Shown in the structure viewer. Drug annotations from DrugDomain.