ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7czlD1 - ECOD Domain | ECOD

ECOD/Domains/e7czlD1

e7czlD1

UID: 002702491

PDB

Range: D:13-351
PDB: 7CZL chain D(all domains)
UniProt: D0VWR8 (all domains)
Gene: psbD

Molecule: Photosystem II D2 protein

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll ACLA
drugDrugBank DB02133
1,2-Dipalmitoyl-Phosphatidyl-Glycerole

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 7CZL RCSB PDB: 7CZL PDBe: 7CZL UniProt: D0VWR8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB02043

MonogalactosyldiacylglycerolMGE

drugDrugBank DB04735

Digalactosyl Diacyl Glycerol (Dgdg)DGD

drugDrugBank DB03426within 5 Å only

FE (II) IONFE2

metal

Pheophytin aPHO

5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONEPQ9

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

+ 1 additive (Bicarbonate ion)

Bicarbonate ionBCT

Shown in the structure viewer. Drug annotations from DrugDomain.