ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ldnA1 - ECOD Domain | ECOD

ECOD/Domains/e6ldnA1

e6ldnA1

UID: 002708754

PDB

Range: A:3-360,A:383-396
PDB: 6LDN chain A(all domains)
UniProt: B6YWC2 (all domains)
Gene: TON_0897

Molecule: CRISPR system Cms protein Csm5 (CRISPR type III A-associated protein Csm5)

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51)

TT-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51.1)

FFamilyRAMPs(304.51.1.2)

Pfam Families

RAMP superfamily

ClanCL0362RAMPS-Cas5-like

External Links

ECOD PDB View: 6LDN RCSB PDB: 6LDN PDBe: 6LDN UniProt: B6YWC2

Downloads

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