ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ryyA2 - ECOD Domain | ECOD

ECOD/Domains/e5ryyA2

e5ryyA2

UID: 002711198

PDB

Range: A:107-190
PDB: 5RYY chain A(all domains)
UniProt: Q9Y2J2 (all domains)
Gene: EPB41L3

Molecule: Isoform 2 of Band 4.1-like protein 3

3D Structure

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Related Domains

Browse other domains in FERM_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyFERM_N(221.1.1.36)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS
DrugBank DB01093
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

FERM N-terminal domain

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 5RYY RCSB PDB: 5RYY PDBe: 5RYY UniProt: Q9Y2J2

Downloads

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