ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6vp1D1 - ECOD Domain | ECOD

ECOD/Domains/e6vp1D1

e6vp1D1

UID: 002713815

PDB

Range: D:13-134
PDB: 6VP1 chain D(all domains)
UniProt: P22629 (all domains)

Molecule: Streptavidin

3D Structure

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Related Domains

Browse other domains in Avidin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLipocalins/Streptavidin(9)

HH-groupAvidin/Streptavidin(9.2)

TT-groupAvidin/Streptavidin(9.2.1)

FFamilyAvidin(9.2.1.1)

Ligands

in contact, ≤ 4 Å

{N-(4-{bis[(pyridin-2-yl-kappaN)methyl]amino-kappaN}butyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}iron(3+)KM3

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer.

Pfam Families

Avidin family

External Links

ECOD PDB View: 6VP1 RCSB PDB: 6VP1 PDBe: 6VP1 UniProt: P22629

Downloads

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Drug annotations from DrugDomain.