ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6xoiC1 - ECOD Domain | ECOD

ECOD/Domains/e6xoiC1

e6xoiC1

UID: 002722465

PDB

Range: C:21-38,C:61-97
PDB: 6XOI chain C(all domains)
UniProt: P63165 (all domains)
Gene: SUMO1

Molecule: Small ubiquitin-related modifier 1

3D Structure

Loading viewer...

Related Domains

Browse other domains in Rad60-SLD →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyRad60-SLD(221.1.1.44)

Ligands

in contact, ≤ 4 Å

[(1R,2R,3S,4R)-4-{[5-(1-benzyl-1H-pyrazole-3-carbonyl)pyrimidin-4-yl]amino}-2,3-dihydroxycyclopentyl]methyl sulfamateVBA

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF11976Rad60-SLD

Ubiquitin-2 like Rad60 SUMO-like

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 6XOI RCSB PDB: 6XOI PDBe: 6XOI UniProt: P63165

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure