ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7aduA1 - ECOD Domain | ECOD

ECOD/Domains/e7aduA1

e7aduA1

UID: 002722496

PDB

Range: A:313-375
PDB: 7ADU chain A(all domains)
UniProt: P14350 (all domains)
Gene: pol

Molecule: Integrase

3D Structure

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Related Domains

Browse other domains in SH3_11 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilySH3_11(4.1.1.100)

Ligands

in contact, ≤ 4 Å

~{N}-[[2,4-bis(fluoranyl)phenyl]methyl]-5-(hydroxymethyl)-1,4-bis(oxidanyl)-2-oxidanylidene-1,8-naphthyridine-3-carboxamideR7K
within 5 Å only

+ 3 additives (Glycerin, 2-(N-morpholino)ethanesulfonic acid, Sulfate ion)

GlycerinGOL
DrugBank DB09462

Pfam Families

Retroviral integrase C-terminal SH3 domain

ClanCL0010SH3

External Links

ECOD PDB View: 7ADU RCSB PDB: 7ADU PDBe: 7ADU UniProt: P14350

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

2-(N-morpholino)ethanesulfonic acidMES

DrugBank DB03814

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.