ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7e7bB3 - ECOD Domain | ECOD

ECOD/Domains/e7e7bB3

e7e7bB3

UID: 002729260

PDB

Range: B:329-529
PDB: 7E7B chain B(all domains)
UniProt: P02452 (all domains)
Gene: COL1A1

Molecule: Spike glycoprotein,Collagen alpha-1(I) chain

3D Structure

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Related Domains

Browse other domains in bCoV_S1_RBD →

Classification

AArchitecturea+b three layers(a.12)

XX-groupCoronavirus spike protein receptor-binding domain(4169)

HH-groupCoronavirus spike protein receptor-binding domain(4169.1)

TT-groupBeta-coronavirus spike protein receptor-binding domain(4169.1.1)

FFamilybCoV_S1_RBD(4169.1.1.1)

Ligands

in contact, ≤ 4 Å

Oleic AcidELA
drugDrugBank DB04224
N-AcetylglucosamineNAG
drugDrugBank DB00141
2-hydroxyethyl 2-deoxy-3,5-bis-O-(2-hydroxyethyl)-6-O-(2-{[(9E)-octadec-9-enoyl]oxy}ethyl)-alpha-L-xylo-hexofuranoside

Pfam Families

PF09408bCoV_S1_RBD

Betacoronavirus spike glycoprotein S1, receptor binding

External Links

ECOD PDB View: 7E7B RCSB PDB: 7E7B PDBe: 7E7B UniProt: P02452

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.