ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7e7dB4 - ECOD Domain | ECOD

ECOD/Domains/e7e7dB4

e7e7dB4

UID: 002729273

PDB

Range: B:329-529
PDB: 7E7D chain B(all domains)
UniProt: P0DTC2 (all domains)
Gene: S

Molecule: Spike glycoprotein,Collagen alpha-1(I) chain

3D Structure

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Related Domains

Browse other domains in bCoV_S1_RBD →

Classification

AArchitecturea+b three layers(a.12)

XX-groupCoronavirus spike protein receptor-binding domain(4169)

HH-groupCoronavirus spike protein receptor-binding domain(4169.1)

TT-groupBeta-coronavirus spike protein receptor-binding domain(4169.1.1)

FFamilybCoV_S1_RBD(4169.1.1.1)

Ligands

in contact, ≤ 4 Å

Oleic AcidELA
drugDrugBank DB04224
N-AcetylglucosamineNAG
drugDrugBank DB00141

Shown in the structure viewer.

Pfam Families

PF09408bCoV_S1_RBD

Betacoronavirus spike glycoprotein S1, receptor binding

External Links

ECOD PDB View: 7E7D RCSB PDB: 7E7D PDBe: 7E7D UniProt: P0DTC2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.