ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7ku7E3 - ECOD Domain | ECOD

ECOD/Domains/e7ku7E3

e7ku7E3

UID: 002731200

PDB

Range: E:45-215
PDB: 7KU7 chain E(all domains)
UniProt: P03354 (all domains)
Gene: gag-pol

Molecule: integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
(6S)-2-(3-chloro-4-fluorobenzyl)-8-ethyl-10-hydroxy-N,6-dimethyl-1,9-dioxo-1,2,6,7,8,9-hexahydropyrazino[1',2':1,5]pyrrolo[2,3-d]pyridazine-4-carboxamideZZX
Zinc ionZN

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 7KU7 RCSB PDB: 7KU7 PDBe: 7KU7 UniProt: P03354

Downloads

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metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.