ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7kz8A3 - ECOD Domain | ECOD

ECOD/Domains/e7kz8A3

e7kz8A3

UID: 002731266

PDB

Range: A:28-60,A:164-264,A:476-504
PDB: 7KZ8 chain A(all domains)
UniProt: A0A1H3V8R8 (all domains)

Molecule: Peptide/nickel transport system substrate-binding protein AapF

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_5(7523.1.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 7KZ8 RCSB PDB: 7KZ8 PDBe: 7KZ8 UniProt: A0A1H3V8R8

Downloads

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