ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7nbgDDD2 - ECOD Domain | ECOD

ECOD/Domains/e7nbgDDD2

e7nbgDDD2

UID: 002733148

PDB

Range: DDD:164-318
PDB: 7NBG chain DDD(all domains)
UniProt: Q9GZT4 (all domains)
Gene: SRR

Molecule: Serine racemase

3D Structure

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Related Domains

Browse other domains in PALP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupTryptophan synthase beta subunit-like PLP-dependent enzymes(2003.4)

TT-groupTryptophan synthase beta subunit-like PLP-dependent enzymes(2003.4.1)

FFamilyPALP(2003.4.1.1)

Ligands

in contact, ≤ 4 Å

Pyridoxal phosphatePLP
drugDrugBank DB00114
Calcium ionCA
metal
Magnesium ion

Pfam Families

Pyridoxal-phosphate dependent enzyme

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 7NBG RCSB PDB: 7NBG PDBe: 7NBG UniProt: Q9GZT4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Sodium ionNA

metal

+ 3 additives (Glycerin, Triethylene glycol, 1,2-ETHANEDIOL)

GlycerinGOL
DrugBank DB09462
Triethylene glycolPGE
DrugBank DB02327
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.