ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6wnkY1 - ECOD Domain | ECOD

ECOD/Domains/e6wnkY1

e6wnkY1

UID: 002735872

PDB

Range: Y:1-223
PDB: 6WNK chain Y(all domains)
UniProt: A5U4D6 (all domains)
Gene: prcB

Molecule: Proteasome subunit beta

3D Structure

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Related Domains

Browse other domains in Proteasome →

Classification

AArchitecturea+b four layers(a.13)

XX-groupNtn/PP2C(210)

HH-groupNtn(210.1)

TT-groupProteasome subunits(210.1.1)

FFamilyProteasome(210.1.1.1)

Ligands

in contact, ≤ 4 Å

(12S,15S)-N-[(2-fluorophenyl)methyl]-10,13-dioxo-12-{2-oxo-2-[(2R)-2-phenylpyrrolidin-1-yl]ethyl}-2-oxa-11,14-diazatricyclo[15.2.2.1~3,7~]docosa-1(19),3(22),4,6,17,20-hexaene-15-carboxamideU5Y

+ 2 additives (Citric acid, N,N-dimethylformamide)

Citric acidCIT
DrugBank DB04272

Pfam Families

PF00227Proteasome

Proteasome subunit

ClanCL0052NTN

External Links

ECOD PDB View: 6WNK RCSB PDB: 6WNK PDBe: 6WNK UniProt: A5U4D6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

N,N-dimethylformamideDMF

DrugBank DB01844

Shown in the structure viewer. Drug annotations from DrugDomain.