ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6p20A1 - ECOD Domain | ECOD

ECOD/Domains/e6p20A1

e6p20A1

UID: 002740039

PDB

Range: A:482-565
PDB: 6P20 chain A(all domains)
UniProt: P16009 (all domains)
Gene: 5

Molecule: Baseplate central spike complex protein gp5,PHIKZ164

3D Structure

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Related Domains

Browse other domains in Gp5_C →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupPhage tail fiber protein trimerization domain(79)

HH-groupPhage tail fiber protein trimerization domain(79.1)

TT-groupPhage tail fiber protein trimerization domain(79.1.1)

FFamilyGp5_C(79.1.1.1)

Ligands

in contact, ≤ 4 Å

Oleic AcidELA
drugDrugBank DB04224
Palmitic AcidPLM
drugDrugBank DB03796
Stearic acid

Pfam Families

Gp5 C-terminal repeat (3 copies)

ClanCL0606Phage_fibre

External Links

ECOD PDB View: 6P20 RCSB PDB: 6P20 PDBe: 6P20 UniProt: P16009

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB03193

Magnesium ionMG

metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.