ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6zcdW1 - ECOD Domain | ECOD

ECOD/Domains/e6zcdW1

e6zcdW1

UID: 002768641

PDB

Range: W:13-107
PDB: 6ZCD chain W(all domains)

Molecule: Vascular endothelial growth factor A

3D Structure

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Related Domains

Browse other domains in PDGF →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupCystine-knot cytokines(385)

HH-groupCystine-knot cytokines(385.1)

TT-groupCystine-knot cytokines(385.1.1)

FFamilyPDGF(385.1.1.5)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Phosphate ion)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

PDGF/VEGF domain

ClanCL0079Cystine-knot

External Links

ECOD PDB View: 6ZCD RCSB PDB: 6ZCD PDBe: 6ZCD

Downloads

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Drug annotations from DrugDomain.